Index _ | A | B | C | D | E | F | G | I | J | L | M | N | O | P | Q | R | S | T | U | V | W _ _call_lmod() (cstar.system.environment.CStarEnvironment method) A account_key (cstar.execution.scheduler_job.PBSJob attribute) (cstar.execution.scheduler_job.SchedulerJob attribute) (cstar.execution.scheduler_job.SlurmJob attribute) AdditionalCode (class in cstar.base.additional_code) append() (cstar.io.source_data.SourceDataCollection method) (cstar.io.staged_data.StagedDataCollection method) Application B basename (cstar.io.source_data.SourceData attribute) Blueprint (class in cstar.orchestration.models) boundary_forcing (cstar.roms.ROMSSimulation attribute) build() (cstar.roms.ROMSSimulation method), [1] (cstar.simulation.Simulation method), [1] C cancel() (cstar.execution.local_process.LocalProcess method), [1] (cstar.execution.scheduler_job.PBSJob method), [1] (cstar.execution.scheduler_job.SlurmJob method), [1] (cstar.orchestration.launch.local.LocalLauncher class method) (cstar.orchestration.launch.slurm.SlurmLauncher class method) (cstar.orchestration.orchestration.Launcher class method) changed_from_source (cstar.io.staged_data.StagedData attribute) (cstar.io.staged_data.StagedDataCollection attribute) check_preconditions() (cstar.orchestration.launch.local.LocalLauncher class method) (cstar.orchestration.launch.slurm.SlurmLauncher class method) (cstar.orchestration.orchestration.Launcher class method) checkout_target (cstar.io.source_data.SourceData attribute) codebase (cstar.roms.ROMSSimulation attribute) (cstar.simulation.Simulation attribute) codebases (cstar.roms.ROMSSimulation attribute) commands (cstar.execution.local_process.LocalProcess attribute) (cstar.execution.scheduler_job.PBSJob attribute) (cstar.execution.scheduler_job.SchedulerJob attribute) (cstar.execution.scheduler_job.SlurmJob attribute) compile_time_code (cstar.roms.ROMSSimulation attribute) (cstar.simulation.Simulation attribute) compiler (cstar.system.environment.CStarEnvironment attribute) configure() (cstar.base.external_codebase.ExternalCodeBase method) (cstar.marbl.external_codebase.MARBLExternalCodeBase method) (cstar.roms.external_codebase.ROMSExternalCodeBase method) configured_account() (cstar.orchestration.launch.slurm.SlurmLauncher static method) configured_queue() (cstar.orchestration.launch.slurm.SlurmLauncher static method) configured_walltime() (cstar.orchestration.launch.slurm.SlurmLauncher static method) ConfiguredBaseModel (class in cstar.orchestration.models) cpus (cstar.execution.scheduler_job.PBSJob attribute) (cstar.execution.scheduler_job.SchedulerJob attribute) (cstar.execution.scheduler_job.SlurmJob attribute) cpus_per_node (cstar.execution.scheduler_job.PBSJob attribute) (cstar.execution.scheduler_job.SchedulerJob attribute) (cstar.execution.scheduler_job.SlurmJob attribute) CStarEnvironment (class in cstar.system.environment) CStarSystemManager (class in cstar.system.manager) D Dataset (class in cstar.orchestration.models) directory (cstar.roms.ROMSSimulation attribute) (cstar.simulation.Simulation attribute) Discretization (class in cstar.base.discretization) discretization (cstar.simulation.Simulation attribute) E end_date (cstar.roms.ROMSSimulation attribute) (cstar.simulation.Simulation attribute) exe_path (cstar.roms.ROMSSimulation attribute) ExecutionHandler (class in cstar.execution.handler) ExternalCodeBase (class in cstar.base.external_codebase) F failure_states() (cstar.orchestration.orchestration.Status class method) file_hash (cstar.io.source_data.SourceData attribute) flatten() (cstar.orchestration.orchestration.Planner method) forcing_corrections (cstar.roms.ROMSSimulation attribute) ForcingConfiguration (class in cstar.applications.roms_marbl.models) from_blueprint() (cstar.roms.ROMSSimulation class method) (cstar.simulation.Simulation class method) (cstar.simulation.Simulation method) from_common_location() (cstar.io.source_data.SourceDataCollection class method) from_dict() (cstar.roms.ROMSSimulation class method) (cstar.simulation.Simulation class method) (cstar.simulation.Simulation method) from_file() (cstar.roms.runtime_settings.ROMSRuntimeSettings class method) from_locations() (cstar.io.source_data.SourceDataCollection class method) G get() (cstar.base.additional_code.AdditionalCode method) (cstar.base.external_codebase.ExternalCodeBase method), [1] (cstar.base.input_dataset.InputDataset method) (cstar.marbl.external_codebase.MARBLExternalCodeBase method) (cstar.roms.external_codebase.ROMSExternalCodeBase method) (cstar.roms.input_dataset.ROMSBoundaryForcing method) (cstar.roms.input_dataset.ROMSForcingCorrections method) (cstar.roms.input_dataset.ROMSInitialConditions method) (cstar.roms.input_dataset.ROMSInputDataset method) (cstar.roms.input_dataset.ROMSModelGrid method) (cstar.roms.input_dataset.ROMSRiverForcing method) (cstar.roms.input_dataset.ROMSSurfaceForcing method) (cstar.roms.input_dataset.ROMSTidalForcing method) get_batch() (cstar.execution.scheduler_job.SlurmJob method) get_closed_nodes() (cstar.orchestration.orchestration.Orchestrator method) get_open_nodes() (cstar.orchestration.orchestration.Orchestrator method) get_queue() (cstar.system.scheduler.Scheduler method), [1] global_max_cpus_per_node (cstar.system.scheduler.Scheduler attribute) global_max_mem_per_node_gb (cstar.system.scheduler.Scheduler attribute) I id (cstar.execution.scheduler_job.PBSJob attribute) (cstar.execution.scheduler_job.SchedulerJob attribute) (cstar.execution.scheduler_job.SlurmJob attribute) identifier (cstar.io.source_data.SourceData attribute) in_progress_states() (cstar.orchestration.orchestration.Status class method) initial_conditions (cstar.roms.ROMSSimulation attribute) input_datasets (cstar.roms.ROMSSimulation attribute) InputDataset (class in cstar.base.input_dataset) is_configured (cstar.base.external_codebase.ExternalCodeBase attribute) is_failure() (cstar.orchestration.orchestration.Status class method) is_in_progress() (cstar.orchestration.orchestration.Status class method) is_ready() (cstar.orchestration.orchestration.Status class method) is_running() (cstar.orchestration.orchestration.Status class method) is_setup (cstar.roms.ROMSSimulation attribute) is_terminal() (cstar.orchestration.orchestration.Status class method) items (cstar.io.staged_data.StagedDataCollection attribute) J job_name (cstar.execution.scheduler_job.PBSJob attribute) (cstar.execution.scheduler_job.SchedulerJob attribute) (cstar.execution.scheduler_job.SlurmJob attribute) L launch() (cstar.orchestration.launch.local.LocalLauncher class method) (cstar.orchestration.launch.slurm.SlurmLauncher class method) (cstar.orchestration.orchestration.Launcher class method) Launcher (class in cstar.orchestration.orchestration) load_lmod_modules() (cstar.system.environment.CStarEnvironment method), [1] LocalLauncher (class in cstar.orchestration.launch.local) LocalProcess (class in cstar.execution.local_process) location (cstar.io.source_data.SourceData attribute) M marbl_codebase (cstar.roms.ROMSSimulation attribute) MARBLExternalCodeBase (class in cstar.marbl.external_codebase) model_grid (cstar.roms.ROMSSimulation attribute) ModelParameterSet (class in cstar.applications.roms_marbl.models) mpi_exec_prefix (cstar.system.environment.CStarEnvironment attribute) N name (cstar.roms.ROMSSimulation attribute) (cstar.simulation.Simulation attribute) nodes (cstar.execution.scheduler_job.PBSJob attribute) (cstar.execution.scheduler_job.SchedulerJob attribute) (cstar.execution.scheduler_job.SlurmJob attribute) O Orchestrator (class in cstar.orchestration.orchestration) other_scheduler_directives (cstar.system.scheduler.Scheduler attribute) output_file (cstar.execution.local_process.LocalProcess attribute) (cstar.execution.scheduler_job.PBSJob attribute) (cstar.execution.scheduler_job.SchedulerJob attribute) (cstar.execution.scheduler_job.SlurmJob attribute) P partition() (cstar.roms.input_dataset.ROMSBoundaryForcing method) (cstar.roms.input_dataset.ROMSForcingCorrections method) (cstar.roms.input_dataset.ROMSInitialConditions method) (cstar.roms.input_dataset.ROMSInputDataset method) (cstar.roms.input_dataset.ROMSModelGrid method) (cstar.roms.input_dataset.ROMSRiverForcing method) (cstar.roms.input_dataset.ROMSSurfaceForcing method) (cstar.roms.input_dataset.ROMSTidalForcing method) partitioned_files (cstar.roms.ROMSSimulation attribute) PartitioningParameterSet (class in cstar.applications.roms_marbl.models) path (cstar.io.staged_data.StagedData attribute) PathFilter (class in cstar.orchestration.models) paths (cstar.io.staged_data.StagedDataCollection attribute) PBSJob (class in cstar.execution.scheduler_job) persist() (cstar.roms.ROMSSimulation method) (cstar.simulation.Simulation method), [1] Planner (class in cstar.orchestration.orchestration) post_run() (cstar.roms.ROMSSimulation method), [1] (cstar.simulation.Simulation method), [1] pre_run() (cstar.roms.ROMSSimulation method), [1] (cstar.simulation.Simulation method), [1] primary_queue_name (cstar.system.scheduler.Scheduler attribute) process_node() (cstar.orchestration.orchestration.Orchestrator method) ProcessHandle (class in cstar.orchestration.orchestration) Q query_status() (cstar.orchestration.launch.local.LocalLauncher class method) (cstar.orchestration.launch.slurm.SlurmLauncher class method) (cstar.orchestration.orchestration.Launcher class method) queue (cstar.execution.scheduler_job.SchedulerJob attribute) queue_name (cstar.execution.scheduler_job.PBSJob attribute) (cstar.execution.scheduler_job.SchedulerJob attribute) (cstar.execution.scheduler_job.SlurmJob attribute) queue_names (cstar.system.scheduler.Scheduler attribute) queues (cstar.system.scheduler.Scheduler attribute) R read() (cstar.io.retriever.Retriever method) ready_states() (cstar.orchestration.orchestration.Status class method) refresh() (cstar.io.retriever.Retriever method) requires_task_distribution (cstar.system.scheduler.Scheduler attribute) reset() (cstar.io.staged_data.StagedData method) (cstar.io.staged_data.StagedDataCollection method) Resource (class in cstar.orchestration.models) restart() (cstar.roms.ROMSSimulation method), [1] (cstar.simulation.Simulation method), [1] restore() (cstar.roms.ROMSSimulation class method) (cstar.simulation.Simulation class method) (cstar.simulation.Simulation method) retrieve() (cstar.orchestration.orchestration.Planner method) retrieve_all() (cstar.orchestration.orchestration.Planner method) Retriever (class in cstar.io.retriever) retriever (cstar.io.stager.Stager attribute) river_forcing (cstar.roms.ROMSSimulation attribute) roms_runtime_settings (cstar.roms.ROMSSimulation attribute) ROMSBoundaryForcing (class in cstar.roms.input_dataset) ROMSCompositeCodeRepository (class in cstar.applications.roms_marbl.models) ROMSExternalCodeBase (class in cstar.roms.external_codebase) ROMSForcingCorrections (class in cstar.roms.input_dataset) ROMSInitialConditions (class in cstar.roms.input_dataset) ROMSInputDataset (class in cstar.roms.input_dataset) RomsMarblBlueprint (class in cstar.applications.roms_marbl.models) ROMSModelGrid (class in cstar.roms.input_dataset) ROMSRiverForcing (class in cstar.roms.input_dataset) ROMSRuntimeSettings (class in cstar.roms.runtime_settings) ROMSSimulation (class in cstar.roms) ROMSSurfaceForcing (class in cstar.roms.input_dataset) ROMSTidalForcing (class in cstar.roms.input_dataset) root_env_var (cstar.base.external_codebase.ExternalCodeBase attribute) Run ID run() (cstar.orchestration.orchestration.Orchestrator method) (cstar.roms.ROMSSimulation method), [1] (cstar.simulation.Simulation method), [1] run_path (cstar.execution.local_process.LocalProcess attribute) (cstar.execution.scheduler_job.PBSJob attribute) (cstar.execution.scheduler_job.SchedulerJob attribute) (cstar.execution.scheduler_job.SlurmJob attribute) running_states() (cstar.orchestration.orchestration.Status class method) runtime_code (cstar.roms.ROMSSimulation attribute) (cstar.simulation.Simulation attribute) RuntimeParameterSet (class in cstar.applications.roms_marbl.models) S save() (cstar.io.retriever.Retriever method) save_script() (cstar.execution.scheduler_job.PBSJob method) (cstar.execution.scheduler_job.SchedulerJob method), [1] (cstar.execution.scheduler_job.SlurmJob method) Scheduler (class in cstar.system.scheduler) scheduler (cstar.execution.scheduler_job.PBSJob attribute) (cstar.execution.scheduler_job.SchedulerJob attribute) (cstar.execution.scheduler_job.SlurmJob attribute) SchedulerJob (class in cstar.execution.scheduler_job) script (cstar.execution.scheduler_job.PBSJob attribute) (cstar.execution.scheduler_job.SchedulerJob attribute) (cstar.execution.scheduler_job.SlurmJob attribute) script_path (cstar.execution.scheduler_job.PBSJob attribute) (cstar.execution.scheduler_job.SchedulerJob attribute) (cstar.execution.scheduler_job.SlurmJob attribute) serialize_to_string() (cstar.roms.runtime_settings.ROMSRuntimeSettings method) serialize_with_schema_ref() (cstar.applications.roms_marbl.models.RomsMarblBlueprint method) (cstar.orchestration.models.Blueprint method) set_env_var() (cstar.system.environment.CStarEnvironment static method) set_fixed_output_root_name() (cstar.roms.runtime_settings.ROMSRuntimeSettings method) setup() (cstar.base.external_codebase.ExternalCodeBase method) (cstar.marbl.external_codebase.MARBLExternalCodeBase method) (cstar.roms.external_codebase.ROMSExternalCodeBase method) (cstar.roms.ROMSSimulation method), [1] (cstar.simulation.Simulation method), [1] Simulation (class in cstar.simulation) SlurmJob (class in cstar.execution.scheduler_job) SlurmLauncher (class in cstar.orchestration.launch.slurm) source (cstar.base.external_codebase.ExternalCodeBase attribute) (cstar.io.staged_data.StagedData attribute) SourceData (class in cstar.io.source_data) SourceDataCollection (class in cstar.io.source_data) stage() (cstar.io.source_data.SourceData method), [1] (cstar.io.source_data.SourceDataCollection method) (cstar.io.stager.Stager method) StagedData (class in cstar.io.staged_data) StagedDataCollection (class in cstar.io.staged_data) Stager (class in cstar.io.stager) stager (cstar.io.source_data.SourceData attribute) start() (cstar.execution.local_process.LocalProcess method), [1] start_date (cstar.roms.ROMSSimulation attribute) (cstar.simulation.Simulation attribute) state_file_from() (cstar.roms.ROMSSimulation class method) (cstar.simulation.Simulation class method) Status (class in cstar.orchestration.orchestration) status (cstar.execution.handler.ExecutionHandler attribute) (cstar.execution.local_process.LocalProcess attribute) (cstar.execution.scheduler_job.PBSJob attribute) (cstar.execution.scheduler_job.SchedulerJob attribute) (cstar.execution.scheduler_job.SlurmJob attribute) Step (class in cstar.orchestration.models) store() (cstar.orchestration.orchestration.Planner method) submit() (cstar.execution.scheduler_job.PBSJob method), [1] (cstar.execution.scheduler_job.SchedulerJob method), [1] (cstar.execution.scheduler_job.SlurmJob method), [1] surface_forcing (cstar.roms.ROMSSimulation attribute) system_name (cstar.system.environment.CStarEnvironment attribute) T Task (class in cstar.orchestration.orchestration) terminal_states() (cstar.orchestration.orchestration.Status class method) tidal_forcing (cstar.roms.ROMSSimulation attribute) to_blueprint() (cstar.simulation.Simulation method) to_dict() (cstar.base.additional_code.AdditionalCode method) (cstar.base.external_codebase.ExternalCodeBase method) (cstar.base.input_dataset.InputDataset method) (cstar.marbl.external_codebase.MARBLExternalCodeBase method) (cstar.roms.external_codebase.ROMSExternalCodeBase method) (cstar.roms.input_dataset.ROMSBoundaryForcing method) (cstar.roms.input_dataset.ROMSForcingCorrections method) (cstar.roms.input_dataset.ROMSInitialConditions method) (cstar.roms.input_dataset.ROMSInputDataset method) (cstar.roms.input_dataset.ROMSModelGrid method) (cstar.roms.input_dataset.ROMSRiverForcing method) (cstar.roms.input_dataset.ROMSSurfaceForcing method) (cstar.roms.input_dataset.ROMSTidalForcing method) (cstar.roms.ROMSSimulation method) (cstar.simulation.Simulation method), [1] to_file() (cstar.roms.runtime_settings.ROMSRuntimeSettings method) tree() (cstar.roms.ROMSSimulation method) U unstage() (cstar.io.staged_data.StagedData method) (cstar.io.staged_data.StagedDataCollection method) update_planner_state() (cstar.orchestration.orchestration.Orchestrator method) update_status() (cstar.orchestration.launch.local.LocalLauncher class method) (cstar.orchestration.launch.slurm.SlurmLauncher class method) (cstar.orchestration.orchestration.Launcher class method) updates() (cstar.execution.handler.ExecutionHandler method), [1] (cstar.execution.local_process.LocalProcess method), [1] (cstar.execution.scheduler_job.PBSJob method) (cstar.execution.scheduler_job.SchedulerJob method), [1] (cstar.execution.scheduler_job.SlurmJob method) uses_lmod (cstar.system.environment.CStarEnvironment attribute) V valid_end_date (cstar.roms.ROMSSimulation attribute) (cstar.simulation.Simulation attribute) valid_start_date (cstar.roms.ROMSSimulation attribute) (cstar.simulation.Simulation attribute) VersionedResource (class in cstar.orchestration.models) W wait() (cstar.execution.local_process.LocalProcess method) walltime (cstar.execution.scheduler_job.PBSJob attribute) (cstar.execution.scheduler_job.SchedulerJob attribute) (cstar.execution.scheduler_job.SlurmJob attribute) Worker working_copy (cstar.base.external_codebase.ExternalCodeBase attribute) Workplan (class in cstar.orchestration.models)