Index _ | A | B | C | D | E | F | G | I | J | L | M | N | O | P | Q | R | S | T | U | V | W | Z _ _call_lmod() (cstar.system.environment.CStarEnvironment method) A account_key (cstar.execution.scheduler_job.PBSJob attribute) (cstar.execution.scheduler_job.SchedulerJob attribute) (cstar.execution.scheduler_job.SlurmJob attribute) AdditionalCode (class in cstar.base.additional_code) append() (cstar.io.source_data.SourceDataCollection method) (cstar.io.staged_data.StagedDataCollection method) Application B basename (cstar.io.source_data.SourceData attribute) Blueprint (class in cstar.orchestration.models) BlueprintState (class in cstar.orchestration.models) boundary_forcing (cstar.roms.ROMSSimulation attribute) build() (cstar.roms.ROMSSimulation method), [1] (cstar.simulation.Simulation method), [1] C cancel() (cstar.execution.local_process.LocalProcess method), [1] (cstar.execution.scheduler_job.PBSJob method), [1] (cstar.execution.scheduler_job.SlurmJob method), [1] (cstar.orchestration.launch.local.LocalLauncher class method) (cstar.orchestration.launch.slurm.SlurmLauncher class method) (cstar.orchestration.orchestration.Launcher class method) capitalize() (cstar.orchestration.models.BlueprintState method) casefold() (cstar.orchestration.models.BlueprintState method) center() (cstar.orchestration.models.BlueprintState method) changed_from_source (cstar.io.staged_data.StagedData attribute) (cstar.io.staged_data.StagedDataCollection attribute) checkout_target (cstar.io.source_data.SourceData attribute) codebase (cstar.roms.ROMSSimulation attribute) (cstar.simulation.Simulation attribute) codebases (cstar.roms.ROMSSimulation attribute) CodeRepository (class in cstar.orchestration.models) commands (cstar.execution.local_process.LocalProcess attribute) (cstar.execution.scheduler_job.PBSJob attribute) (cstar.execution.scheduler_job.SchedulerJob attribute) (cstar.execution.scheduler_job.SlurmJob attribute) compile_time_code (cstar.roms.ROMSSimulation attribute) (cstar.simulation.Simulation attribute) compiler (cstar.system.environment.CStarEnvironment attribute) configure() (cstar.base.external_codebase.ExternalCodeBase method) (cstar.marbl.external_codebase.MARBLExternalCodeBase method) (cstar.roms.external_codebase.ROMSExternalCodeBase method) configured_account() (cstar.orchestration.launch.slurm.SlurmLauncher static method) configured_queue() (cstar.orchestration.launch.slurm.SlurmLauncher static method) configured_walltime() (cstar.orchestration.launch.slurm.SlurmLauncher static method) ConfiguredBaseModel (class in cstar.orchestration.models) count() (cstar.orchestration.models.BlueprintState method) cpus (cstar.execution.scheduler_job.PBSJob attribute) (cstar.execution.scheduler_job.SchedulerJob attribute) (cstar.execution.scheduler_job.SlurmJob attribute) cpus_per_node (cstar.execution.scheduler_job.PBSJob attribute) (cstar.execution.scheduler_job.SchedulerJob attribute) (cstar.execution.scheduler_job.SlurmJob attribute) CStarEnvironment (class in cstar.system.environment) CStarSystemManager (class in cstar.system.manager) D Dataset (class in cstar.orchestration.models) directory (cstar.roms.ROMSSimulation attribute) (cstar.simulation.Simulation attribute) Discretization (class in cstar.base.discretization) discretization (cstar.simulation.Simulation attribute) E encode() (cstar.orchestration.models.BlueprintState method) end_date (cstar.roms.ROMSSimulation attribute) (cstar.simulation.Simulation attribute) endswith() (cstar.orchestration.models.BlueprintState method) exe_path (cstar.roms.ROMSSimulation attribute) ExecutionHandler (class in cstar.execution.handler) expandtabs() (cstar.orchestration.models.BlueprintState method) ExternalCodeBase (class in cstar.base.external_codebase) F failure_states() (cstar.orchestration.orchestration.Status class method) file_hash (cstar.io.source_data.SourceData attribute) find() (cstar.orchestration.models.BlueprintState method) flatten() (cstar.orchestration.orchestration.Planner method) forcing_corrections (cstar.roms.ROMSSimulation attribute) ForcingConfiguration (class in cstar.orchestration.models) format() (cstar.orchestration.models.BlueprintState method) format_map() (cstar.orchestration.models.BlueprintState method) from_blueprint() (cstar.roms.ROMSSimulation class method) (cstar.simulation.Simulation class method) (cstar.simulation.Simulation method) from_common_location() (cstar.io.source_data.SourceDataCollection class method) from_dict() (cstar.roms.ROMSSimulation class method) (cstar.simulation.Simulation class method) (cstar.simulation.Simulation method) from_file() (cstar.roms.runtime_settings.ROMSRuntimeSettings class method) from_locations() (cstar.io.source_data.SourceDataCollection class method) G get() (cstar.base.additional_code.AdditionalCode method) (cstar.base.external_codebase.ExternalCodeBase method), [1] (cstar.base.input_dataset.InputDataset method) (cstar.marbl.external_codebase.MARBLExternalCodeBase method) (cstar.roms.external_codebase.ROMSExternalCodeBase method) (cstar.roms.input_dataset.ROMSBoundaryForcing method) (cstar.roms.input_dataset.ROMSForcingCorrections method) (cstar.roms.input_dataset.ROMSInitialConditions method) (cstar.roms.input_dataset.ROMSInputDataset method) (cstar.roms.input_dataset.ROMSModelGrid method) (cstar.roms.input_dataset.ROMSRiverForcing method) (cstar.roms.input_dataset.ROMSSurfaceForcing method) (cstar.roms.input_dataset.ROMSTidalForcing method) get_batch() (cstar.execution.scheduler_job.SlurmJob method) get_closed_nodes() (cstar.orchestration.orchestration.Orchestrator method) get_open_nodes() (cstar.orchestration.orchestration.Orchestrator method) get_queue() (cstar.system.scheduler.Scheduler method), [1] global_max_cpus_per_node (cstar.system.scheduler.Scheduler attribute) global_max_mem_per_node_gb (cstar.system.scheduler.Scheduler attribute) I id (cstar.execution.scheduler_job.PBSJob attribute) (cstar.execution.scheduler_job.SchedulerJob attribute) (cstar.execution.scheduler_job.SlurmJob attribute) identifier (cstar.io.source_data.SourceData attribute) in_progress_states() (cstar.orchestration.orchestration.Status class method) index() (cstar.orchestration.models.BlueprintState method) initial_conditions (cstar.roms.ROMSSimulation attribute) input_datasets (cstar.roms.ROMSSimulation attribute) InputDataset (class in cstar.base.input_dataset) is_configured (cstar.base.external_codebase.ExternalCodeBase attribute) is_failure() (cstar.orchestration.orchestration.Status class method) is_in_progress() (cstar.orchestration.orchestration.Status class method) is_ready() (cstar.orchestration.orchestration.Status class method) is_running() (cstar.orchestration.orchestration.Status class method) is_setup (cstar.roms.ROMSSimulation attribute) is_terminal() (cstar.orchestration.orchestration.Status class method) isalnum() (cstar.orchestration.models.BlueprintState method) isalpha() (cstar.orchestration.models.BlueprintState method) isascii() (cstar.orchestration.models.BlueprintState method) isdecimal() (cstar.orchestration.models.BlueprintState method) isdigit() (cstar.orchestration.models.BlueprintState method) isidentifier() (cstar.orchestration.models.BlueprintState method) islower() (cstar.orchestration.models.BlueprintState method) isnumeric() (cstar.orchestration.models.BlueprintState method) isprintable() (cstar.orchestration.models.BlueprintState method) isspace() (cstar.orchestration.models.BlueprintState method) istitle() (cstar.orchestration.models.BlueprintState method) isupper() (cstar.orchestration.models.BlueprintState method) items (cstar.io.staged_data.StagedDataCollection attribute) J job_name (cstar.execution.scheduler_job.PBSJob attribute) (cstar.execution.scheduler_job.SchedulerJob attribute) (cstar.execution.scheduler_job.SlurmJob attribute) join() (cstar.orchestration.models.BlueprintState method) L launch() (cstar.orchestration.launch.local.LocalLauncher class method) (cstar.orchestration.launch.slurm.SlurmLauncher class method) (cstar.orchestration.orchestration.Launcher class method) Launcher (class in cstar.orchestration.orchestration) ljust() (cstar.orchestration.models.BlueprintState method) load_lmod_modules() (cstar.system.environment.CStarEnvironment method), [1] LocalLauncher (class in cstar.orchestration.launch.local) LocalProcess (class in cstar.execution.local_process) location (cstar.io.source_data.SourceData attribute) lower() (cstar.orchestration.models.BlueprintState method) lstrip() (cstar.orchestration.models.BlueprintState method) M maketrans() (cstar.orchestration.models.BlueprintState static method) marbl_codebase (cstar.roms.ROMSSimulation attribute) MARBLExternalCodeBase (class in cstar.marbl.external_codebase) model_grid (cstar.roms.ROMSSimulation attribute) ModelParameterSet (class in cstar.orchestration.models) mpi_exec_prefix (cstar.system.environment.CStarEnvironment attribute) N name (cstar.roms.ROMSSimulation attribute) (cstar.simulation.Simulation attribute) nodes (cstar.execution.scheduler_job.PBSJob attribute) (cstar.execution.scheduler_job.SchedulerJob attribute) (cstar.execution.scheduler_job.SlurmJob attribute) O Orchestrator (class in cstar.orchestration.orchestration) other_scheduler_directives (cstar.system.scheduler.Scheduler attribute) output_file (cstar.execution.local_process.LocalProcess attribute) (cstar.execution.scheduler_job.PBSJob attribute) (cstar.execution.scheduler_job.SchedulerJob attribute) (cstar.execution.scheduler_job.SlurmJob attribute) P ParameterSet (class in cstar.orchestration.models) partition() (cstar.orchestration.models.BlueprintState method) (cstar.roms.input_dataset.ROMSBoundaryForcing method) (cstar.roms.input_dataset.ROMSForcingCorrections method) (cstar.roms.input_dataset.ROMSInitialConditions method) (cstar.roms.input_dataset.ROMSInputDataset method) (cstar.roms.input_dataset.ROMSModelGrid method) (cstar.roms.input_dataset.ROMSRiverForcing method) (cstar.roms.input_dataset.ROMSSurfaceForcing method) (cstar.roms.input_dataset.ROMSTidalForcing method) partitioned_files (cstar.roms.ROMSSimulation attribute) PartitioningParameterSet (class in cstar.orchestration.models) path (cstar.io.staged_data.StagedData attribute) PathFilter (class in cstar.orchestration.models) paths (cstar.io.staged_data.StagedDataCollection attribute) PBSJob (class in cstar.execution.scheduler_job) persist() (cstar.roms.ROMSSimulation method) (cstar.simulation.Simulation method), [1] Planner (class in cstar.orchestration.orchestration) post_run() (cstar.roms.ROMSSimulation method), [1] (cstar.simulation.Simulation method), [1] pre_run() (cstar.roms.ROMSSimulation method), [1] (cstar.simulation.Simulation method), [1] primary_queue_name (cstar.system.scheduler.Scheduler attribute) process_node() (cstar.orchestration.orchestration.Orchestrator method) ProcessHandle (class in cstar.orchestration.orchestration) Q query_status() (cstar.orchestration.launch.local.LocalLauncher class method) (cstar.orchestration.launch.slurm.SlurmLauncher class method) (cstar.orchestration.orchestration.Launcher class method) queue (cstar.execution.scheduler_job.SchedulerJob attribute) queue_name (cstar.execution.scheduler_job.PBSJob attribute) (cstar.execution.scheduler_job.SchedulerJob attribute) (cstar.execution.scheduler_job.SlurmJob attribute) queue_names (cstar.system.scheduler.Scheduler attribute) queues (cstar.system.scheduler.Scheduler attribute) R read() (cstar.io.retriever.Retriever method) ready_states() (cstar.orchestration.orchestration.Status class method) refresh() (cstar.io.retriever.Retriever method) removeprefix() (cstar.orchestration.models.BlueprintState method) removesuffix() (cstar.orchestration.models.BlueprintState method) replace() (cstar.orchestration.models.BlueprintState method) requires_task_distribution (cstar.system.scheduler.Scheduler attribute) reset() (cstar.io.staged_data.StagedData method) (cstar.io.staged_data.StagedDataCollection method) Resource (class in cstar.orchestration.models) restart() (cstar.roms.ROMSSimulation method), [1] (cstar.simulation.Simulation method), [1] restore() (cstar.roms.ROMSSimulation class method) (cstar.simulation.Simulation class method) (cstar.simulation.Simulation method) retrieve() (cstar.orchestration.orchestration.Planner method) retrieve_all() (cstar.orchestration.orchestration.Planner method) Retriever (class in cstar.io.retriever) retriever (cstar.io.stager.Stager attribute) rfind() (cstar.orchestration.models.BlueprintState method) rindex() (cstar.orchestration.models.BlueprintState method) river_forcing (cstar.roms.ROMSSimulation attribute) rjust() (cstar.orchestration.models.BlueprintState method) roms_runtime_settings (cstar.roms.ROMSSimulation attribute) ROMSBoundaryForcing (class in cstar.roms.input_dataset) ROMSCompositeCodeRepository (class in cstar.orchestration.models) ROMSExternalCodeBase (class in cstar.roms.external_codebase) ROMSForcingCorrections (class in cstar.roms.input_dataset) ROMSInitialConditions (class in cstar.roms.input_dataset) ROMSInputDataset (class in cstar.roms.input_dataset) RomsMarblBlueprint (class in cstar.orchestration.models) ROMSModelGrid (class in cstar.roms.input_dataset) ROMSRiverForcing (class in cstar.roms.input_dataset) ROMSRuntimeSettings (class in cstar.roms.runtime_settings) ROMSSimulation (class in cstar.roms) ROMSSurfaceForcing (class in cstar.roms.input_dataset) ROMSTidalForcing (class in cstar.roms.input_dataset) root_env_var (cstar.base.external_codebase.ExternalCodeBase attribute) rpartition() (cstar.orchestration.models.BlueprintState method) rsplit() (cstar.orchestration.models.BlueprintState method) rstrip() (cstar.orchestration.models.BlueprintState method) Run ID run() (cstar.orchestration.orchestration.Orchestrator method) (cstar.roms.ROMSSimulation method), [1] (cstar.simulation.Simulation method), [1] run_path (cstar.execution.local_process.LocalProcess attribute) (cstar.execution.scheduler_job.PBSJob attribute) (cstar.execution.scheduler_job.SchedulerJob attribute) (cstar.execution.scheduler_job.SlurmJob attribute) running_states() (cstar.orchestration.orchestration.Status class method) runtime_code (cstar.roms.ROMSSimulation attribute) (cstar.simulation.Simulation attribute) RuntimeParameterSet (class in cstar.orchestration.models) S save() (cstar.io.retriever.Retriever method) save_script() (cstar.execution.scheduler_job.PBSJob method) (cstar.execution.scheduler_job.SchedulerJob method), [1] (cstar.execution.scheduler_job.SlurmJob method) Scheduler (class in cstar.system.scheduler) scheduler (cstar.execution.scheduler_job.PBSJob attribute) (cstar.execution.scheduler_job.SchedulerJob attribute) (cstar.execution.scheduler_job.SlurmJob attribute) SchedulerJob (class in cstar.execution.scheduler_job) script (cstar.execution.scheduler_job.PBSJob attribute) (cstar.execution.scheduler_job.SchedulerJob attribute) (cstar.execution.scheduler_job.SlurmJob attribute) script_path (cstar.execution.scheduler_job.PBSJob attribute) (cstar.execution.scheduler_job.SchedulerJob attribute) (cstar.execution.scheduler_job.SlurmJob attribute) serialize_to_string() (cstar.roms.runtime_settings.ROMSRuntimeSettings method) set_env_var() (cstar.system.environment.CStarEnvironment static method) set_fixed_output_root_name() (cstar.roms.runtime_settings.ROMSRuntimeSettings method) setup() (cstar.base.external_codebase.ExternalCodeBase method) (cstar.marbl.external_codebase.MARBLExternalCodeBase method) (cstar.roms.external_codebase.ROMSExternalCodeBase method) (cstar.roms.ROMSSimulation method), [1] (cstar.simulation.Simulation method), [1] Simulation (class in cstar.simulation) SlurmJob (class in cstar.execution.scheduler_job) SlurmLauncher (class in cstar.orchestration.launch.slurm) source (cstar.base.external_codebase.ExternalCodeBase attribute) (cstar.io.staged_data.StagedData attribute) SourceData (class in cstar.io.source_data) SourceDataCollection (class in cstar.io.source_data) split() (cstar.orchestration.models.BlueprintState method) splitlines() (cstar.orchestration.models.BlueprintState method) stage() (cstar.io.source_data.SourceData method), [1] (cstar.io.source_data.SourceDataCollection method) (cstar.io.stager.Stager method) StagedData (class in cstar.io.staged_data) StagedDataCollection (class in cstar.io.staged_data) Stager (class in cstar.io.stager) stager (cstar.io.source_data.SourceData attribute) start() (cstar.execution.local_process.LocalProcess method), [1] start_date (cstar.roms.ROMSSimulation attribute) (cstar.simulation.Simulation attribute) startswith() (cstar.orchestration.models.BlueprintState method) state_file_from() (cstar.roms.ROMSSimulation class method) (cstar.simulation.Simulation class method) Status (class in cstar.orchestration.orchestration) status (cstar.execution.handler.ExecutionHandler attribute) (cstar.execution.local_process.LocalProcess attribute) (cstar.execution.scheduler_job.PBSJob attribute) (cstar.execution.scheduler_job.SchedulerJob attribute) (cstar.execution.scheduler_job.SlurmJob attribute) Step (class in cstar.orchestration.models) store() (cstar.orchestration.orchestration.Planner method) strip() (cstar.orchestration.models.BlueprintState method) submit() (cstar.execution.scheduler_job.PBSJob method), [1] (cstar.execution.scheduler_job.SchedulerJob method), [1] (cstar.execution.scheduler_job.SlurmJob method), [1] surface_forcing (cstar.roms.ROMSSimulation attribute) swapcase() (cstar.orchestration.models.BlueprintState method) system_name (cstar.system.environment.CStarEnvironment attribute) T Task (class in cstar.orchestration.orchestration) terminal_states() (cstar.orchestration.orchestration.Status class method) tidal_forcing (cstar.roms.ROMSSimulation attribute) title() (cstar.orchestration.models.BlueprintState method) to_blueprint() (cstar.simulation.Simulation method) to_dict() (cstar.base.additional_code.AdditionalCode method) (cstar.base.external_codebase.ExternalCodeBase method) (cstar.base.input_dataset.InputDataset method) (cstar.marbl.external_codebase.MARBLExternalCodeBase method) (cstar.roms.external_codebase.ROMSExternalCodeBase method) (cstar.roms.input_dataset.ROMSBoundaryForcing method) (cstar.roms.input_dataset.ROMSForcingCorrections method) (cstar.roms.input_dataset.ROMSInitialConditions method) (cstar.roms.input_dataset.ROMSInputDataset method) (cstar.roms.input_dataset.ROMSModelGrid method) (cstar.roms.input_dataset.ROMSRiverForcing method) (cstar.roms.input_dataset.ROMSSurfaceForcing method) (cstar.roms.input_dataset.ROMSTidalForcing method) (cstar.roms.ROMSSimulation method) (cstar.simulation.Simulation method), [1] to_file() (cstar.roms.runtime_settings.ROMSRuntimeSettings method) translate() (cstar.orchestration.models.BlueprintState method) tree() (cstar.roms.ROMSSimulation method) U unstage() (cstar.io.staged_data.StagedData method) (cstar.io.staged_data.StagedDataCollection method) update_planner_state() (cstar.orchestration.orchestration.Orchestrator method) update_status() (cstar.orchestration.launch.local.LocalLauncher class method) (cstar.orchestration.launch.slurm.SlurmLauncher class method) (cstar.orchestration.orchestration.Launcher class method) updates() (cstar.execution.handler.ExecutionHandler method), [1] (cstar.execution.local_process.LocalProcess method), [1] (cstar.execution.scheduler_job.PBSJob method) (cstar.execution.scheduler_job.SchedulerJob method), [1] (cstar.execution.scheduler_job.SlurmJob method) upper() (cstar.orchestration.models.BlueprintState method) uses_lmod (cstar.system.environment.CStarEnvironment attribute) V valid_end_date (cstar.roms.ROMSSimulation attribute) (cstar.simulation.Simulation attribute) valid_start_date (cstar.roms.ROMSSimulation attribute) (cstar.simulation.Simulation attribute) VersionedResource (class in cstar.orchestration.models) W wait() (cstar.execution.local_process.LocalProcess method) walltime (cstar.execution.scheduler_job.PBSJob attribute) (cstar.execution.scheduler_job.SchedulerJob attribute) (cstar.execution.scheduler_job.SlurmJob attribute) Worker working_copy (cstar.base.external_codebase.ExternalCodeBase attribute) Workplan (class in cstar.orchestration.models) Z zfill() (cstar.orchestration.models.BlueprintState method)